Detailed information of SNP:
|
SNP ID:
sf0223870607(Gbrowse)
Chromosome: chr02 Position: 23870607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 86.06% | 13.94% |
| All Indica | 793 | 77.30% | 22.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 209 | 56.46% | 43.54% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223870607 | G->A | INTERGENIC | None |