Detailed information of SNP:
|
SNP ID:
sf0223897639(Gbrowse)
Chromosome: chr02 Position: 23897639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.26% | 25.74% |
| All Indica | 798 | 65.29% | 34.71% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223897639 | G->A | INTERGENIC | None |