Detailed information of SNP:
|
SNP ID:
sf0223902794(Gbrowse)
Chromosome: chr02 Position: 23902794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 73.78% | 26.22% |
| All Indica | 795 | 56.23% | 43.77% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 38.87% | 61.13% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223902794 | C->T | INTERGENIC | None |