Detailed information of SNP:
|
SNP ID:
sf0223908157(Gbrowse)
Chromosome: chr02 Position: 23908157 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.12% | 37.88% |
| All Indica | 795 | 36.10% | 63.90% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 20.32% | 79.68% |
| Indica II | 211 | 41.23% | 58.77% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223908157 | T->A | INTERGENIC | None |