Detailed information of SNP:
|
SNP ID:
sf0223920155(Gbrowse)
Chromosome: chr02 Position: 23920155 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 94.65% | 5.35% |
| All Indica | 766 | 91.12% | 8.88% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 191 | 81.68% | 18.32% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223920155 | C->T | INTERGENIC | None |