Detailed information of SNP:
|
SNP ID:
sf0223920746(Gbrowse)
Chromosome: chr02 Position: 23920746 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.39% | 7.61% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223920746 | C->A | INTERGENIC | None |