Detailed information of SNP:
|
SNP ID:
sf0223941949(Gbrowse)
Chromosome: chr02 Position: 23941949 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 32.54% | 67.46% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 21.33% | 78.67% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223941949 | A->G | INTERGENIC | None |