Detailed information of SNP:
|
SNP ID:
sf0223967512(Gbrowse)
Chromosome: chr02 Position: 23967512 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 50.32% | 49.68% |
| All Indica | 792 | 17.42% | 82.58% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 9.12% | 90.88% |
| Indica II | 209 | 26.79% | 73.21% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223967512 | A->G | INTERGENIC | None |