Detailed information of SNP:
|
SNP ID:
sf0223997635(Gbrowse)
Chromosome: chr02 Position: 23997635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 96.07% | 3.93% |
| All Indica | 791 | 96.21% | 3.79% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 87.38% | 12.62% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223997635 | C->T | INTERGENIC | None |