Detailed information of SNP:
|
SNP ID:
sf0224002083(Gbrowse)
Chromosome: chr02 Position: 24002083 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 91.30% | 8.70% |
| All Indica | 763 | 85.85% | 14.15% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 362 | 89.78% | 10.22% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 196 | 69.90% | 30.10% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224002083 | C->T | INTERGENIC | None |