Detailed information of SNP:
|
SNP ID:
sf0224005200(Gbrowse)
Chromosome: chr02 Position: 24005200 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 94.51% | 5.49% |
| All Indica | 735 | 91.70% | 8.30% |
| All Japonica | 493 | 99.19% | 0.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 352 | 92.90% | 7.10% |
| Indica II | 194 | 89.69% | 10.31% |
| Indica Intermediate | 189 | 91.53% | 8.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224005200 | T->C | INTERGENIC | None |