Detailed information of SNP:
|
SNP ID:
sf0224006869(Gbrowse)
Chromosome: chr02 Position: 24006869 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 94.59% | 5.41% |
| All Indica | 792 | 96.46% | 3.54% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 62 | 43.55% | 56.45% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224006869 | T->C | INTERGENIC | None |