Detailed information of SNP:
|
SNP ID:
sf0224007982(Gbrowse)
Chromosome: chr02 Position: 24007982 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.68% | 9.32% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224007982 | G->A | INTERGENIC | None |