Detailed information of SNP:
|
SNP ID:
sf0224013791(Gbrowse)
Chromosome: chr02 Position: 24013791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.83% | 9.17% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224013791 | C->T | INTERGENIC | None |