Detailed information of SNP:
|
SNP ID:
sf0224030060(Gbrowse)
Chromosome: chr02 Position: 24030060 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 94.72% | 5.28% |
| All Indica | 782 | 90.66% | 9.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224030060 | G->A | LOC_Os02g39780(LOC_Os02g39780.1) | Non-Synonymous SNP |