Detailed information of SNP:
|
SNP ID:
sf0224034931(Gbrowse)
Chromosome: chr02 Position: 24034931 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 58.67% | 41.33% |
| All Indica | 795 | 90.44% | 9.56% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224034931 | G->C | LOC_Os02g39780(LOC_Os02g39780.1) | INTRON |