Detailed information of SNP:
|
SNP ID:
sf0224061948(Gbrowse)
Chromosome: chr02 Position: 24061948 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 65.42% | 34.58% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 8.28% | 91.72% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 333 | 7.81% | 92.19% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224061948 | T->G | INTERGENIC | None |