Detailed information of SNP:
|
SNP ID:
sf0224076486(Gbrowse)
Chromosome: chr02 Position: 24076486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.00% | 14.00% |
| All Indica | 794 | 79.72% | 20.28% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 83.11% | 16.89% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224076486 | G->A | LOC_Os02g39850(LOC_Os02g39850.1) | INTRON |