Detailed information of SNP:



SNP ID: sf0224085348(Gbrowse)

Chromosome: chr02

Position: 24085348
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 89.64% 10.36%
All Indica799 81.85% 18.15%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 64.53% 35.47%
Indica II213 98.12% 1.88%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0224085348 C->T LOC_Os02g39870(LOC_Os02g39870.1) INTRON