Detailed information of SNP:
|
SNP ID:
sf0224088618(Gbrowse)
Chromosome: chr02 Position: 24088618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.39% | 28.61% |
| All Indica | 799 | 52.82% | 47.18% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224088618 | C->T | INTERGENIC | None |