Detailed information of SNP:
|
SNP ID:
sf0224101440(Gbrowse)
Chromosome: chr02 Position: 24101440 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224101440 | A->G | INTERGENIC | None |