Detailed information of SNP:
|
SNP ID:
sf0224103727(Gbrowse)
Chromosome: chr02 Position: 24103727 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.75% | 38.25% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224103727 | T->C | INTERGENIC | None |