Detailed information of SNP:
|
SNP ID:
sf0224104427(Gbrowse)
Chromosome: chr02 Position: 24104427 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 55.34% | 44.66% |
| All Indica | 738 | 85.09% | 14.91% |
| All Japonica | 491 | 8.96% | 91.04% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 356 | 91.57% | 8.43% |
| Indica II | 189 | 73.02% | 26.98% |
| Indica Intermediate | 193 | 84.97% | 15.03% |
| Temperate Japonica | 332 | 9.94% | 90.06% |
| Tropical Japonica | 91 | 8.79% | 91.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224104427 | A->C | LOC_Os02g39900(LOC_Os02g39900.1) | INTRON |