Detailed information of SNP:
|
SNP ID:
sf0224111474(Gbrowse)
Chromosome: chr02 Position: 24111474 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.21% | 28.79% |
| All Indica | 798 | 52.01% | 47.99% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 51.20% | 48.80% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224111474 | G->A | INTERGENIC | None |