Detailed information of SNP:
|
SNP ID:
sf0224122667(Gbrowse)
Chromosome: chr02 Position: 24122667 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.49% | 21.51% |
| All Indica | 799 | 64.46% | 35.54% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 53.87% | 46.13% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224122667 | T->A | INTERGENIC | None |