Detailed information of SNP:
|
SNP ID:
sf0224123448(Gbrowse)
Chromosome: chr02 Position: 24123448 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 69.69% | 30.31% |
| All Indica | 792 | 49.49% | 50.51% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 50.94% | 49.06% |
| Indica II | 210 | 39.05% | 60.95% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224123448 | A->C | INTERGENIC | None |