Detailed information of SNP:
|
SNP ID:
sf0224124009(Gbrowse)
Chromosome: chr02 Position: 24124009 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.08% | 21.92% |
| All Indica | 799 | 63.95% | 36.05% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224124009 | C->T | INTERGENIC | None |