Detailed information of SNP:
|
SNP ID:
sf0224131495(Gbrowse)
Chromosome: chr02 Position: 24131495 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.02% | 30.98% |
| All Indica | 797 | 47.93% | 52.07% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224131495 | G->A | LOC_Os02g39910(LOC_Os02g39910.1) | UTR_5_PRIME |