Detailed information of SNP:
|
SNP ID:
sf0224137258(Gbrowse)
Chromosome: chr02 Position: 24137258 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.81% | 18.19% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224137258 | A->T | LOC_Os02g39920(LOC_Os02g39920.1) | INTRON |