Detailed information of SNP:
|
SNP ID:
sf0224152231(Gbrowse)
Chromosome: chr02 Position: 24152231 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.52% | 39.48% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 495 | 12.53% | 87.47% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224152231 | T->C | INTERGENIC | None |