Detailed information of SNP:
|
SNP ID:
sf0224167990(Gbrowse)
Chromosome: chr02 Position: 24167990 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.88% | 2.12% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 491 | 94.30% | 5.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224167990 | C->A | LOC_Os02g39970(LOC_Os02g39970.2) | INTRON |
| sf0224167990 | C->A | LOC_Os02g39970(LOC_Os02g39970.3) | INTRON |
| sf0224167990 | C->A | LOC_Os02g39970(LOC_Os02g39970.1) | INTRON |
| sf0224167990 | C->A | LOC_Os02g39970(LOC_Os02g39970.4) | INTRON |