Detailed information of SNP:
|
SNP ID:
sf0224170539(Gbrowse)
Chromosome: chr02 Position: 24170539 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.47% | 13.53% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224170539 | T->C | INTERGENIC | None |