Detailed information of SNP:
|
SNP ID:
sf0224201986(Gbrowse)
Chromosome: chr02 Position: 24201986 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.64% | 10.36% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224201986 | C->T | INTERGENIC | None |