Detailed information of SNP:
|
SNP ID:
sf0224209678(Gbrowse)
Chromosome: chr02 Position: 24209678 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.62% | 10.38% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224209678 | C->T | INTERGENIC | None |