Detailed information of SNP:
|
SNP ID:
sf0224215315(Gbrowse)
Chromosome: chr02 Position: 24215315 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.79% | 5.21% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224215315 | T->G | INTERGENIC | None |