Detailed information of SNP:
|
SNP ID:
sf0224222759(Gbrowse)
Chromosome: chr02 Position: 24222759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 98.77% | 1.23% |
| All Indica | 783 | 99.74% | 0.26% |
| All Japonica | 483 | 96.89% | 3.11% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224222759 | C->T | LOC_Os02g40010(LOC_Os02g40010.1) | UTR_3_PRIME |
| sf0224222759 | C->T | LOC_Os02g40010(LOC_Os02g40010.4) | UTR_3_PRIME |
| sf0224222759 | C->T | LOC_Os02g40010(LOC_Os02g40010.2) | UTR_3_PRIME |
| sf0224222759 | C->T | LOC_Os02g40010(LOC_Os02g40010.3) | UTR_3_PRIME |