Detailed information of SNP:
|
SNP ID:
sf0224224079(Gbrowse)
Chromosome: chr02 Position: 24224079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.06% | 36.94% |
| All Indica | 796 | 56.03% | 43.97% |
| All Japonica | 494 | 78.54% | 21.46% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 40.53% | 59.47% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224224079 | G->A | INTERGENIC | None |