Detailed information of SNP:
|
SNP ID:
sf0224227239(Gbrowse)
Chromosome: chr02 Position: 24227239 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.48% | 31.52% |
| All Indica | 798 | 83.21% | 16.79% |
| All Japonica | 494 | 45.95% | 54.05% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 52.40% | 47.60% |
| Tropical Japonica | 92 | 29.35% | 70.65% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224227239 | G->A | INTERGENIC | None |