Detailed information of SNP:
|
SNP ID:
sf0224227264(Gbrowse)
Chromosome: chr02 Position: 24227264 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.01% | 30.99% |
| All Indica | 797 | 83.81% | 16.19% |
| All Japonica | 491 | 46.03% | 53.97% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 54.03% | 45.97% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 331 | 52.27% | 47.73% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224227264 | A->G | INTERGENIC | None |