Detailed information of SNP:
|
SNP ID:
sf0224227474(Gbrowse)
Chromosome: chr02 Position: 24227474 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.31% | 27.69% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 492 | 51.42% | 48.58% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 332 | 56.02% | 43.98% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224227474 | A->G | INTERGENIC | None |