Detailed information of SNP:



SNP ID: sf0224228048(Gbrowse)

Chromosome: chr02

Position: 24228048
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1409 70.90% 29.10%
All Indica794 84.89% 15.11%
All Japonica492 49.59% 50.41%
Aus67 73.13% 26.87%
Indica I373 98.39% 1.61%
Indica II212 57.55% 42.45%
Indica Intermediate209 88.52% 11.48%
Temperate Japonica333 54.65% 45.35%
Tropical Japonica93 36.56% 63.44%
Japonica Intermediate66 42.42% 57.58%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0224228048 A->G INTERGENIC None