Detailed information of SNP:
|
SNP ID:
sf0224228048(Gbrowse)
Chromosome: chr02 Position: 24228048 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 70.90% | 29.10% |
| All Indica | 794 | 84.89% | 15.11% |
| All Japonica | 492 | 49.59% | 50.41% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 333 | 54.65% | 45.35% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224228048 | A->G | INTERGENIC | None |