Detailed information of SNP:
|
SNP ID:
sf0224233700(Gbrowse)
Chromosome: chr02 Position: 24233700 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.71% | 36.29% |
| All Indica | 799 | 56.70% | 43.30% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224233700 | T->A | LOC_Os02g40030(LOC_Os02g40030.1) | UTR_3_PRIME |
| sf0224233700 | T->A | LOC_Os02g40030(LOC_Os02g40030.2) | UTR_3_PRIME |