Detailed information of SNP:
|
SNP ID:
sf0224234540(Gbrowse)
Chromosome: chr02 Position: 24234540 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.29% | 42.71% |
| All Indica | 799 | 55.32% | 44.68% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 40.80% | 59.20% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224234540 | C->T | LOC_Os02g40040(LOC_Os02g40040.1) | Synonymous |