Detailed information of SNP:
|
SNP ID:
sf0224236951(Gbrowse)
Chromosome: chr02 Position: 24236951 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 70.00% | 30.00% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 490 | 49.39% | 50.61% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 329 | 56.53% | 43.47% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224236951 | G->T | INTERGENIC | None |