Detailed information of SNP:
|
SNP ID:
sf0224236983(Gbrowse)
Chromosome: chr02 Position: 24236983 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.53% | 30.47% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 48.69% | 51.31% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224236983 | G->A | INTERGENIC | None |