Detailed information of SNP:
|
SNP ID:
sf0224237942(Gbrowse)
Chromosome: chr02 Position: 24237942 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 68.69% | 31.31% |
| All Indica | 797 | 81.68% | 18.32% |
| All Japonica | 495 | 49.49% | 50.51% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 333 | 56.76% | 43.24% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224237942 | T->C | INTERGENIC | None |