Detailed information of SNP:
|
SNP ID:
sf0224243076(Gbrowse)
Chromosome: chr02 Position: 24243076 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 85.21% | 14.79% |
| All Indica | 791 | 92.79% | 7.21% |
| All Japonica | 487 | 76.59% | 23.41% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 80.29% | 19.71% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 329 | 75.99% | 24.01% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224243076 | T->C | INTERGENIC | None |