Detailed information of SNP:
|
SNP ID:
sf0224243174(Gbrowse)
Chromosome: chr02 Position: 24243174 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.85% | 18.15% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 496 | 73.39% | 26.61% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224243174 | C->T | INTERGENIC | None |