Detailed information of SNP:
|
SNP ID:
sf0224243334(Gbrowse)
Chromosome: chr02 Position: 24243334 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 84.39% | 15.61% |
| All Indica | 780 | 92.69% | 7.31% |
| All Japonica | 491 | 74.54% | 25.46% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 203 | 78.82% | 21.18% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224243334 | C->T | INTERGENIC | None |