Detailed information of SNP:
|
SNP ID:
sf0224243359(Gbrowse)
Chromosome: chr02 Position: 24243359 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.41% | 29.59% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 495 | 39.19% | 60.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224243359 | A->C | INTERGENIC | None |